Papers
When using the results of this server in a scientific publication, please cite the following papers:
- R. Ashizawa, S. Kotelnikov, O. Khan, et al.
" Modeling Protein–Protein and Protein–Ligand Interactions by the ClusPro Team in CASP16,”
Proteins: Structure, Function, and Bioinformatics 94(1), 183–191 (2026)
doi:10.1002/prot.70066
- Kotelnikov S, Ashizawa R, Popov KI, et al.
"Accurate ligand–protein docking in CASP15 using the ClusPro LigTBM server,”
Proteins 91(12), 1822–1828 (2023)
doi:10.1002/prot.26587
- Kotelnikov, Alekseenko, Liu, Ignatov, Padhorny, Brini, Lukin, Coutsias, Dill, Kozakov
"Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4,”
Journal of Computer-Aided Molecular Design 34(2), 179–189 (2020)
doi:10.1007/s10822-019-00257-1
(accepted pdf)
- Alekseenko, Kotelnikov, Ignatov, Egbert, Kholodov, Vajda, Kozakov
"ClusPro LigTBM: Automated Template-Based Small Molecule Docking,”
Journal of Molecular Biology 432(11), 3404–3410 (2020)
doi:10.1016/j.jmb.2019.12.011
(accepted pdf)